About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58927ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG
Paelopatides58928-
Paelopatides58929UBIQUITIN THIOESTERASE
Paelopatides58930-
Paelopatides58931RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides58932FI04643P-RELATED
Paelopatides58933MONOCARBOXYLATE TRANSPORTER
Paelopatides58934-
Paelopatides58935DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
Paelopatides58936NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1
Paelopatides58937SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides58938ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides58939CARBOXYLIC ESTER HYDROLASE
Paelopatides58940-
Paelopatides58941-
Paelopatides58942CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides58943-
Paelopatides58944MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1
Paelopatides58945-
Paelopatides58946FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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