About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58988PROTEIN CBG26694
Paelopatides58989PROTEIN CBG26694
Paelopatides58990PROTEIN CBG26694
Paelopatides58991PROTEIN CBG26694
Paelopatides58992PROTEIN TAG-278-RELATED
Paelopatides58993PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides58994PROTEIN CBG26694
Paelopatides58995SIMILAR TO HYPOTHETICAL PROTEIN
Paelopatides58996ENDONUCLEASE-RELATED
Paelopatides58997ARM REPEAT SUPERFAMILY PROTEIN
Paelopatides58998-
Paelopatides58999SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides59000REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59001IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides59002NEGATIVE ELONGATION FACTOR E
Paelopatides59003BONUS, ISOFORM C-RELATED
Paelopatides59004DUAL SPECIFICITY PROTEIN PHOSPHATASE
Paelopatides59005CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides59006ASPARTYL PROTEASE DDI-RELATED
Paelopatides59007ENDONUCLEASE-RELATED
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