About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58967MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58968RETICULOPHAGY REGULATOR 3
Paelopatides58969TRNA-DIHYDROURIDINE SYNTHASE
Paelopatides58970KINASE-RELATED
Paelopatides58971MUCIN-17
Paelopatides58972KINASE-RELATED
Paelopatides58973-
Paelopatides58974-
Paelopatides58975KINASE-RELATED
Paelopatides58976-
Paelopatides58977CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides58978STRICTOSIDINE SYNTHASE-RELATED
Paelopatides58979SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N
Paelopatides58980PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58981DED DOMAIN-CONTAINING PROTEIN
Paelopatides58982REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58983-
Paelopatides58984ENDONUCLEASE-RELATED
Paelopatides58986PROTEIN TAG-278-RELATED
Paelopatides58987AGAP005574-PA
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