About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59049PROTEIN CBG26694
Paelopatides59050ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59051ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59052-
Paelopatides59053REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59054-
Paelopatides59056FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59057CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides59058REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59059-
Paelopatides59060-
Paelopatides59061GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides59062HEDGEHOG
Paelopatides59063-
Paelopatides59064-
Paelopatides59065PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN
Paelopatides59066-
Paelopatides59067PROTEIN CBG26694
Paelopatides59068DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4
Paelopatides59069PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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