About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58806DYNEIN INTERMEDIATE CHAIN
Paelopatides58807DYNEIN INTERMEDIATE CHAIN
Paelopatides58808NETRIN RECEPTOR UNC5
Paelopatides58809-
Paelopatides58810PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58811-
Paelopatides58812-
Paelopatides58813VACUOLAR PROTEIN SORTING VPS41
Paelopatides58814ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26
Paelopatides58815ACYLTRANSFERASE
Paelopatides58816TRANSLATION INITIATION FACTOR-RELATED
Paelopatides5881739S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL
Paelopatides58818YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN
Paelopatides58819FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides58820SAPOSIN-RELATED
Paelopatides58821SAPOSIN-RELATED
Paelopatides58822CCR4 NOT-RELATED
Paelopatides5882352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides58824LEUCOKININ RECEPTOR-RELATED
Paelopatides58825ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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