About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58700CELL DIVISION PROTEIN KINASE
Paelopatides58701N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides58702MODULATOR OF FTSH PROTEASE HFLC
Paelopatides58703AAA-FAMILY ATPASE
Paelopatides58704-
Paelopatides58705-
Paelopatides58706-
Paelopatides58707MODULATOR OF SMOOTHENED PROTEIN
Paelopatides58708ATP-DEPENDENT RNA HELICASE DBP3
Paelopatides58709BONUS, ISOFORM C-RELATED
Paelopatides58710-
Paelopatides58711SUZ DOMAIN-CONTAINING PROTEIN 1
Paelopatides58712CDNA SEQUENCE BC021608
Paelopatides58713-
Paelopatides58714-
Paelopatides58715PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
Paelopatides58716PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED
Paelopatides58717PROTEIN CBG26694
Paelopatides58718PROTEIN CBG26694
Paelopatides58719PROTEIN CBG26694
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