About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58659-
Paelopatides58660SI:CH211-196P9.1-RELATED
Paelopatides58661-
Paelopatides58662-
Paelopatides58663DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER
Paelopatides58664-
Paelopatides58665-
Paelopatides58666SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides58667-
Paelopatides58668ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides58669ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides58670TRANSPOSON
Paelopatides58671-
Paelopatides58672-
Paelopatides58673-
Paelopatides58674THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
Paelopatides58675-
Paelopatides58676-
Paelopatides58677REVERSE TRANSCRIPTASES
Paelopatides58678MYND-TYPE DOMAIN-CONTAINING PROTEIN
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