About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58618NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides58619-
Paelopatides5862052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides58621-
Paelopatides58623-
Paelopatides58624TRANSPOSABLE ELEMENT-RELATED
Paelopatides58625-
Paelopatides58626INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides58627INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides58628INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides58629GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides58630DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides58631GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides58632-
Paelopatides58633-
Paelopatides58634SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides58635-
Paelopatides58636REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58637REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58638RIBONUCLEASE H2 SUBUNIT B
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