About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58639CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
Paelopatides58640N-ACETYLGALACTOSAMINYLTRANSFERASE
Paelopatides58641AGAP008170-PA
Paelopatides58642CYTOKINE RECEPTOR
Paelopatides58643INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides58644-
Paelopatides58645NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides58646-
Paelopatides58647MYOTUBULARIN-RELATED
Paelopatides58648-
Paelopatides58649G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides5865052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides58651-
Paelopatides58652-
Paelopatides58653TYROSINE-PROTEIN KINASE
Paelopatides58654PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58655PROTEIN CBG20422
Paelopatides58656RETROTRANSPOSON
Paelopatides58657RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides58658PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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