About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58535CYTOCHROME P450 FAMILY 4
Paelopatides58536HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides58537HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides58538PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides58539TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides58540ENDONUCLEASE-RELATED
Paelopatides58541PROTEIN CBG26694
Paelopatides58542PROTEIN CBG26694
Paelopatides58543-
Paelopatides58544TRANSPOSON
Paelopatides58545ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides58546ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides58547TYROSINE-PROTEIN KINASE
Paelopatides58548-
Paelopatides58549VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Paelopatides58550-
Paelopatides58551FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58552FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58553CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58554MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
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