About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58577EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
Paelopatides58578POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED
Paelopatides58579POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED
Paelopatides58580PROMININ PROM PROTEIN
Paelopatides58581DNA POLYMERASE CATALYTIC SUBUNIT
Paelopatides58582REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58584RNA BINDING PROTEIN
Paelopatides58585ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides58586-
Paelopatides58587ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
Paelopatides58588ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58589REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58590ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides58591PROTEIN CBG26694
Paelopatides58592TRANSPOSABLE ELEMENT-RELATED
Paelopatides58593TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides58594-
Paelopatides5859515-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides58596CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58597CXC DOMAIN-CONTAINING PROTEIN-RELATED
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