About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58598-
Paelopatides5859915-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides58600REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58601-
Paelopatides58602-
Paelopatides58603PEPTIDASE S8
Paelopatides58604COILED-COIL DOMAIN-CONTAINING PROTEIN 181
Paelopatides58605SPINAL CORD EXPRESSION PROTEIN 4
Paelopatides58606QUINONE OXIDOREDUCTASE PIG3-RELATED
Paelopatides58607PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58608PROTEIN CBG26694
Paelopatides58609FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58610-
Paelopatides58611-
Paelopatides58612PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58613SLR5058 PROTEIN
Paelopatides58614-
Paelopatides58615NETRIN RECEPTOR UNC5
Paelopatides58616-
Paelopatides58617-
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