About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58720CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
Paelopatides58721ENDONUCLEASE-RELATED
Paelopatides58724REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58725-
Paelopatides58726PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58727PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58728-
Paelopatides58729-
Paelopatides58730PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
Paelopatides58731PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
Paelopatides58732ENZYMATIC POLYPROTEIN-RELATED
Paelopatides58733POL PROTEIN
Paelopatides58734CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58735FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58738IP13529P
Paelopatides58739F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58740-
Paelopatides58741BETA TRANSDUCIN-RELATED PROTEIN
Paelopatides58742REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58743PROTEIN CBG26694
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