About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58826UPF0547 PROTEIN C16ORF87
Paelopatides58827FI04643P-RELATED
Paelopatides58828PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58829PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58830PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58831RETROTRANSPOSON
Paelopatides58832FI04643P-RELATED
Paelopatides58833CAS SCAFFOLDING PROTEIN
Paelopatides58834CAS SCAFFOLDING PROTEIN
Paelopatides58835-
Paelopatides58836-
Paelopatides58837GH28348P
Paelopatides58838ALPHA-N-ACETYLGLUCOSAMINIDASE
Paelopatides58839ALPHA-N-ACETYLGLUCOSAMINIDASE
Paelopatides58840INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG
Paelopatides58841-
Paelopatides58842ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides58843BONUS, ISOFORM C-RELATED
Paelopatides58844BONUS, ISOFORM C-RELATED
Paelopatides58845TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
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