About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59172SYNAPTOBREVIN HOMOLOG YKT6
Paelopatides59173ZINC FINGER CCHC DOMAIN-CONTAINING
Paelopatides59174ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59175ZINC FINGER CCHC DOMAIN-CONTAINING
Paelopatides59176GLYCOLIPID TRANSFER PROTEIN-RELATED
Paelopatides59177MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides59178-
Paelopatides59179F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides59180-
Paelopatides59181SI:CH211-196P9.1-RELATED
Paelopatides59182PROTEIN CBG26694
Paelopatides59183LETHAL 2 GIANT LARVAE PROTEIN
Paelopatides59184DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides59185-
Paelopatides59186SI:CH211-196P9.1-RELATED
Paelopatides59187-
Paelopatides59188-
Paelopatides59189PROTEIN CBG26694
Paelopatides59190RAGULATOR COMPLEX PROTEIN LAMTOR5
Paelopatides59191NETRIN RECEPTOR UNC5
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