About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59336ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59337ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides59338-
Paelopatides59339IP13529P
Paelopatides59340-
Paelopatides59341FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59342FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59343ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59344ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59345PROTEIN CBG26694
Paelopatides59346ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59347PROTEIN CBG26694
Paelopatides59348ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59349PH DOMAIN-CONTAINING PROTEIN
Paelopatides59350PROTEIN CBG26694
Paelopatides59351ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59352O-ACYLTRANSFERASE
Paelopatides59353BUCENTAUR RELATED
Paelopatides59354REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59355COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
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