About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59464LIM DOMAIN KINASE 1
Paelopatides59465IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides59466DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides59467-
Paelopatides59468REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59469EXPRESSED PROTEIN
Paelopatides59470-
Paelopatides59471-
Paelopatides59472PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59473RETROTRANSPOSON
Paelopatides59474PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
Paelopatides59475GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides59476HEDGEHOG
Paelopatides59477TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides59478FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
Paelopatides59479-
Paelopatides59480-
Paelopatides59481PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides59482PROTEIN CBG10425
Paelopatides59483G DOMAIN-CONTAINING PROTEIN
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