About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58345-
Paelopatides58346-
Paelopatides58349NFRKB-RELATED
Paelopatides58350OPSIN
Paelopatides58351SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
Paelopatides5835226S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9
Paelopatides58353REVERSE TRANSCRIPTASES
Paelopatides58354-
Paelopatides58355ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides58356L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides58357PROTEIN CBG26694
Paelopatides58358ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides58359UNCHARACTERIZED
Paelopatides58360BONUS, ISOFORM C-RELATED
Paelopatides58361F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
Paelopatides58362GLYCOPROTEIN HORMONE RECEPTOR
Paelopatides58363CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58364-
Paelopatides58365PROTEIN CBG26694
Paelopatides58366UNCHARACTERIZED
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