About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58305NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
Paelopatides58306NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
Paelopatides58307-
Paelopatides58308-
Paelopatides58309CALBINDIN
Paelopatides58310-
Paelopatides58311HOMEOBOX PROTEIN ARISTALESS
Paelopatides58312PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II
Paelopatides58313-
Paelopatides58314UV-STIMULATED SCAFFOLD PROTEIN A
Paelopatides58315GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides58316OXYSTEROL-BINDING PROTEIN-RELATED
Paelopatides58317-
Paelopatides58318-
Paelopatides58319OXA1
Paelopatides58320-
Paelopatides58321MULTICOPPER OXIDASE-RELATED
Paelopatides58322TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides58323ENZYMATIC POLYPROTEIN-RELATED
Paelopatides58324ENDONUCLEASE-RELATED
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