About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58245RTDR1
Paelopatides58246RTDR1
Paelopatides58247PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58248-
Paelopatides58249SERINE-THREONINE PROTEIN KINASE
Paelopatides58250SERINE-THREONINE PROTEIN KINASE
Paelopatides58251BONUS, ISOFORM C-RELATED
Paelopatides58252BONUS, ISOFORM C-RELATED
Paelopatides58253PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58254METAXIN RELATED
Paelopatides58255-
Paelopatides58256FANCONI-ASSOCIATED NUCLEASE 1
Paelopatides58257-
Paelopatides58258-
Paelopatides58259FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58260FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58261TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides58262EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides58263FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58264SOLUTE CARRIER FAMILY 35
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