About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58165-
Paelopatides58166PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides58167E3 UBIQUITIN-PROTEIN LIGASE TRIP12
Paelopatides58168E3 UBIQUITIN-PROTEIN LIGASE TRIP12
Paelopatides58169-
Paelopatides58170-
Paelopatides58171-
Paelopatides58172CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58173-
Paelopatides58174PROTEIN CBR-CLEC-78
Paelopatides58175ACETYL-COA C-ACYLTRANSFERASE
Paelopatides58176REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58177HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides58178ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58179IRON-SULFUR DOMAIN CONTAINING PROTEIN
Paelopatides58180PROTEIN PHOSPHATASE 2C
Paelopatides58181PROTEIN PHOSPHATASE 2C
Paelopatides58182MITOCHONDRIA-EATING PROTEIN-RELATED
Paelopatides58183SYNAPTOBREVIN HOMOLOG YKT6
Paelopatides58184SYNAPTOBREVIN HOMOLOG YKT6
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