About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58081PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
Paelopatides58082PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
Paelopatides58083PROTEIN DISPATCHED-RELATED
Paelopatides58085-
Paelopatides58086EXPORTIN 4,7-RELATED
Paelopatides58087LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides58088IG-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides58089EXPORTIN 4,7-RELATED
Paelopatides58090PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58091S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides58092ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
Paelopatides58093-
Paelopatides58094RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
Paelopatides58095-
Paelopatides58096SI:CH211-262H13.3-RELATED-RELATED
Paelopatides58097SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides58098BUCENTAUR RELATED
Paelopatides58099MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides58100PROTEIN CBG26694
Paelopatides58101ATP-BINDING CASSETTE SUB-FAMILY C
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