About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57972GLUTAMATE CYSTEINE LIGASE
Paelopatides57973GLUTAMATE CYSTEINE LIGASE
Paelopatides57974NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides57975ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides57976-
Paelopatides57977TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides57978-
Paelopatides57979REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57980U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN
Paelopatides57982-
Paelopatides57983REVERSE TRANSCRIPTASE
Paelopatides57984PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides57985MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8
Paelopatides579865-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides57987REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57988-
Paelopatides57995CAVEOLIN
Paelopatides57996PROTEIN CBG26694
Paelopatides57997PROTEIN CBG26694
Paelopatides57998THIOSULFATE SULFERTANSFERASE
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