About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57847REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57848REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57849F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57850PROLYL ENDOPEPTIDASE
Paelopatides57851INSULIN RECEPTOR SUBSTRATE
Paelopatides57852ENDONUCLEASE-RELATED
Paelopatides57853ENZYMATIC POLYPROTEIN-RELATED
Paelopatides57854ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides57855ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides57856SACSIN
Paelopatides57857ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides57858GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1
Paelopatides57859CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57860PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides57861CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5
Paelopatides57862CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5
Paelopatides57863-
Paelopatides57864UNCHARACTERIZED
Paelopatides57865CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57866CXC DOMAIN-CONTAINING PROTEIN-RELATED
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