About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57805DYNACTIN 1-RELATED MICROTUBULE-BINDING
Paelopatides57806-
Paelopatides57807PEPTIDASE S8
Paelopatides57808PEPTIDASE S8
Paelopatides57809ROK (REPRESSOR, ORF, KINASE) FAMILY
Paelopatides57810SOX TRANSCRIPTION FACTOR
Paelopatides57812BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
Paelopatides57813-
Paelopatides57814INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides57815HYPOTHETICAL LOC314168
Paelopatides57816-
Paelopatides57817-
Paelopatides57818-
Paelopatides57819LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
Paelopatides57820F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57821GUANYLATE BINDING PROTEIN
Paelopatides57822TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides57823-
Paelopatides57824UNCHARACTERIZED
Paelopatides57825-
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