About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57702COLLAGEN ALPHA
Paelopatides57703POL PROTEIN
Paelopatides57704F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57705REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57706REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57707FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides57708PHOSPHATIDYLINOSITOL GLYCAN, CLASS C
Paelopatides57709POL PROTEIN
Paelopatides57710ENZYMATIC POLYPROTEIN-RELATED
Paelopatides57711INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides57712MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Paelopatides57713-
Paelopatides57714-
Paelopatides57715-
Paelopatides57716REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57717-
Paelopatides57718-
Paelopatides57719ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
Paelopatides57720ABSCISSION/NOCUT CHECKPOINT REGULATOR
Paelopatides57721PALMITOYLTRANSFERASE ZDHHC16
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