About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58124PROTEIN CBG26694
Paelopatides58125-
Paelopatides58126-
Paelopatides58127AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides58128-
Paelopatides58129-
Paelopatides58130AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides58131WAP FOUR-DISULFIDE CORE DOMAIN PROTEIN 1
Paelopatides58132CARBOHYDRATE SULFOTRANSFERASE
Paelopatides58133PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58134TRANSPOSON
Paelopatides58135TRANSPOSON
Paelopatides58136-
Paelopatides58137-
Paelopatides58138E3 UFM1-PROTEIN LIGASE 1
Paelopatides58139E3 UFM1-PROTEIN LIGASE 1
Paelopatides58140PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides58141TRANSPORTIN 3 AND IMPORTIN 13
Paelopatides58142-
Paelopatides58143-
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