About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58060PROTEIN CBG26694
Paelopatides58061TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides58062EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides58063S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides58064-
Paelopatides58065FUMARYLACETOACETASE
Paelopatides58067PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides58068-
Paelopatides58069EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides58070FIBRILLIN-RELATED
Paelopatides58071EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides58072ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides58073UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
Paelopatides58074-
Paelopatides58075ADIPOR/PROGESTIN RECEPTOR-RELATED
Paelopatides58076THUMP DOMAIN CONTAINING PROTEIN 1-RELATED
Paelopatides58077DESTABILASE-RELATED
Paelopatides58078RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides58079MIR DOMAIN-CONTAINING PROTEIN
Paelopatides58080PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
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