About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58102-
Paelopatides58103-
Paelopatides58104REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58105DNA2/NAM7 HELICASE FAMILY
Paelopatides58106DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER
Paelopatides58107-
Paelopatides58108CASPASE ACTIVITY AND APOPTOSIS INHIBITOR 1
Paelopatides58109-
Paelopatides58110-
Paelopatides58111-
Paelopatides58114ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides58115-
Paelopatides58116-
Paelopatides58117-
Paelopatides58118-
Paelopatides58119NETRIN/LAMININ-RELATED
Paelopatides58120-
Paelopatides58121-
Paelopatides58122NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides58123-
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