About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58367PROTEIN CBG26694
Paelopatides58368ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides58369ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides58370ENZYMATIC POLYPROTEIN-RELATED
Paelopatides58371ENZYMATIC POLYPROTEIN-RELATED
Paelopatides58372ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides58373AMP DEAMINASE
Paelopatides58375REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58376-
Paelopatides58377S-LAYER PROTEIN
Paelopatides58378REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58379-
Paelopatides58380NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides58381NETRIN RECEPTOR UNC5
Paelopatides58382FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides58383MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides58384REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58385VACUOLAR PROTON ATPASES
Paelopatides58386LD44762P
Paelopatides58387-
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