About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58325-
Paelopatides58326-
Paelopatides58327NON-SMC ELEMENT 1-RELATED
Paelopatides58328NON-SMC ELEMENT 1-RELATED
Paelopatides58329-
Paelopatides58330D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
Paelopatides58331PROTEIN CBG03580
Paelopatides58332ZINC FINGER PROTEIN
Paelopatides58333TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides58334SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides58335TUMOR NECROSIS FACTOR RECEPTOR
Paelopatides58336TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides58337TRANSPOSASE, PUTATIVE-RELATED
Paelopatides58338INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58339MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides58340VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Paelopatides58341LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides58342LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides58343LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides58344DNAJ HOMOLOG SUBFAMILY C MEMBER 7
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