About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides58388-
Paelopatides58389-
Paelopatides58390-
Paelopatides58391RIKEN CDNA D130052B06 GENE
Paelopatides58392BAND 7 PROTEIN-RELATED
Paelopatides58393REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58394SI:CH211-59O9.10
Paelopatides58395BAND 7 PROTEIN-RELATED
Paelopatides58396RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides58397ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58398PROTEIN CBG26694
Paelopatides58399INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Paelopatides58400-
Paelopatides58401TORSIN
Paelopatides58402-
Paelopatides58403FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides58404CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides58405REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides58406ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides58407EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
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