About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56576MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides56577-
Paelopatides56578EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
Paelopatides56579EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
Paelopatides56580EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
Paelopatides56581SULFOTRANSFERASE SULT
Paelopatides56582-
Paelopatides56583SYNAPTOTAGMIN
Paelopatides56584ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides56585EPM2A-INTERACTING PROTEIN 1
Paelopatides56586TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Paelopatides56587RNA HELICASE
Paelopatides56588ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides56589GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides56590PROTEIN CBG26694
Paelopatides5659152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides56592PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides56593-
Paelopatides56594-
Paelopatides56596-
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