About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56512RETROTRANSPOSON
Paelopatides56513LD44762P
Paelopatides56514-
Paelopatides56515ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides56516CUBILIN-LIKE PROTEIN
Paelopatides56518OVOCHYMASE-RELATED
Paelopatides56520UNCHARACTERIZED
Paelopatides56521UNCHARACTERIZED
Paelopatides56522EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7
Paelopatides56523WD40 REPEAT PROTEIN
Paelopatides56524-
Paelopatides565253'-5' EXORIBONUCLEASE CSL4-RELATED
Paelopatides56526REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides56527-
Paelopatides56528SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides56529CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides56530-
Paelopatides56531ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides56532-
Paelopatides56533ELECTRON TRANSPORT OXIDOREDUCTASE
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