About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56402-
Paelopatides56403PHOSPHOLIPASE B, PLB1
Paelopatides56404TRANSCRIPTION ELONGATION FACTOR SPT6
Paelopatides56405ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides56406AT09986P-RELATED
Paelopatides56407-
Paelopatides56408-
Paelopatides56409ARP2/3 COMPLEX 21 KD SUBUNIT
Paelopatides56410L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides56411CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides56412-
Paelopatides56413GTP-BINDING
Paelopatides56414-
Paelopatides56417PREFOLDIN SUBUNIT 3
Paelopatides56418MULTICOPPER OXIDASE-RELATED
Paelopatides56419POL PROTEIN
Paelopatides56420SYNAPTOTAGMIN
Paelopatides56421PROTEIN CBG26694
Paelopatides56422TRANSPOSASE, PUTATIVE-RELATED
Paelopatides56423INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
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