About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56358-
Paelopatides56359ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides56360-
Paelopatides56361PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides56362-
Paelopatides56364-
Paelopatides56365SERINE/THREONINE-PROTEIN KINASE
Paelopatides56367ACID PHOSPHATASE-RELATED
Paelopatides56368ACID PHOSPHATASE-RELATED
Paelopatides56369-
Paelopatides56370REVERSE TRANSCRIPTASES
Paelopatides56371-
Paelopatides56372REVERSE TRANSCRIPTASES
Paelopatides56374ACROSIN-RELATED
Paelopatides56375-
Paelopatides56376-
Paelopatides56377NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
Paelopatides56378NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
Paelopatides56379DNA REPAIR/RNA PROCESSING CPSF FAMILY
Paelopatides56380DNA REPAIR/RNA PROCESSING CPSF FAMILY
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