About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56315-
Paelopatides56316-
Paelopatides56317-
Paelopatides56318VACUOLAR SORTING PROTEIN 53
Paelopatides56319-
Paelopatides56320DELTEX-RELATED
Paelopatides56321PROTEIN LIAT1
Paelopatides56322CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides56323-
Paelopatides56325-
Paelopatides56327-
Paelopatides56328DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides56329GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
Paelopatides56330ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides56332-
Paelopatides56333PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides56334AMINO ACID TRANSPORTER
Paelopatides56335PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides56336GLUTATHIONE S-TRANSFERASE
Paelopatides56337L1 TRANSPOSABLE ELEMENT-RELATED
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