About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56198VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
Paelopatides56199EXODEOXYRIBONUCLEASE III
Paelopatides56200BUCENTAUR RELATED
Paelopatides56201BUCENTAUR RELATED
Paelopatides56202REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides56203SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Paelopatides56204-
Paelopatides56205-
Paelopatides56206REVERSE TRANSCRIPTASES
Paelopatides56207-
Paelopatides56208NETRIN RECEPTOR UNC5
Paelopatides56209ZINC FINGER AND SCAN DOMAIN-CONTAINING
Paelopatides56210EPM2A-INTERACTING PROTEIN 1
Paelopatides56211ENDONUCLEASE-RELATED
Paelopatides56212ENZYMATIC POLYPROTEIN-RELATED
Paelopatides56213POL PROTEIN
Paelopatides56214-
Paelopatides56215COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides56216-
Paelopatides56217-
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