About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56274PHOSPHOLIPASE B-RELATED
Paelopatides56275ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
Paelopatides56276L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides56277OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides56278-
Paelopatides56279-
Paelopatides56280-
Paelopatides56281-
Paelopatides56282PHOSPHATASE, ORPHAN 1, 2
Paelopatides56283-
Paelopatides56284-
Paelopatides56285-
Paelopatides56286EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides56287-
Paelopatides56288-
Paelopatides56289CLATHRIN HEAVY CHAIN RELATED
Paelopatides56290NXPE FAMILY MEMBER
Paelopatides56291-
Paelopatides56292HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides56293TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
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