About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56135-
Paelopatides56136BUCENTAUR RELATED
Paelopatides56137ENDONUCLEASE
Paelopatides56138GLUTATHIONE S-TRANSFERASE
Paelopatides56139GLUTATHIONE S-TRANSFERASE
Paelopatides56140TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN
Paelopatides56141DIAMINE N-ACETYLTRANSFERASE
Paelopatides56142EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides56143-
Paelopatides56144PROTEIN EVA-1
Paelopatides56145FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides56149UNCHARACTERIZED
Paelopatides56150POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4
Paelopatides56151POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4
Paelopatides56152PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides56153RHO GUANINE EXCHANGE FACTOR-RELATED
Paelopatides56154-
Paelopatides56155REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides56156-
Paelopatides56157-
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