About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56026SODIUM-BILE ACID COTRANSPORTER
Paelopatides56027-
Paelopatides56028POTASSIUM CHANNEL, SUBFAMILY K
Paelopatides56029-
Paelopatides56030CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides56031-
Paelopatides56032-
Paelopatides56033-
Paelopatides56034-
Paelopatides56035EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides56036PROTEIN CBG26694
Paelopatides56037VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Paelopatides56038FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER
Paelopatides56039TESTIS-SPECIFIC Y-ENCODED PROTEIN
Paelopatides56040DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides56041DYNEIN HEAVY CHAIN
Paelopatides56042DYNEIN HEAVY CHAIN
Paelopatides56043PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides56050-
Paelopatides56051FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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