About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55903TRANSPOSABLE ELEMENT-RELATED
Paelopatides55904-
Paelopatides55905RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
Paelopatides55906PROTEIN CBG26694
Paelopatides55907GTP-BINDING
Paelopatides55908-
Paelopatides55909COILED-COIL DOMAIN-CONTAINING PROTEIN 172
Paelopatides55910RBP-RELATED
Paelopatides55911-
Paelopatides55912PSEUDOURIDYLATE SYNTHASE
Paelopatides55913C-TERMINAL-BINDING PROTEIN
Paelopatides55914C-TERMINAL-BINDING PROTEIN
Paelopatides55915PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides55916CENTROSOMAL PROTEIN OF 55 KDA
Paelopatides55917ENDONUCLEASE-RELATED
Paelopatides55918-
Paelopatides55919HELICASE SRCAP-RELATED
Paelopatides55920-
Paelopatides55921-
Paelopatides55922COILED-COIL DOMAIN-CONTAINING PROTEIN 117
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