About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55800F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55801-
Paelopatides55802HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides55803ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides55804PROTEIN CBG26694
Paelopatides55805-
Paelopatides55806SERINE-THREONINE PROTEIN KINASE
Paelopatides55807SERINE-THREONINE PROTEIN KINASE
Paelopatides55808REVERSE TRANSCRIPTASES
Paelopatides55809CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55810-
Paelopatides55811-
Paelopatides55812ENDONUCLEASE-RELATED
Paelopatides55813ENZYMATIC POLYPROTEIN-RELATED
Paelopatides55814POL PROTEIN
Paelopatides55815REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55816ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1
Paelopatides55817-
Paelopatides55818KELCH PROTEIN
Paelopatides55819-
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