About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55820-
Paelopatides55821L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides55822BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Paelopatides55823POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides55824PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides55825TRANSMEMBRANE PROTEIN
Paelopatides55826DELTA ADAPTIN-RELATED
Paelopatides55827ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides55828TRANS-SULFURATION ENZYME FAMILY MEMBER
Paelopatides55829ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
Paelopatides55830-
Paelopatides55831E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED
Paelopatides55832E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED
Paelopatides55833LIPASE
Paelopatides55834YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
Paelopatides55835SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides55836PROTEIN CBG26694
Paelopatides55837-
Paelopatides55838MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides55840OXYSTEROL-BINDING PROTEIN-RELATED
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