About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55863UNCHARACTERIZED
Paelopatides55864-
Paelopatides55865REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55866ATP-DEPENDENT DNA HELICASE
Paelopatides55867THAP DOMAIN PROTEIN
Paelopatides55868PROTEIN CBG26694
Paelopatides55869-
Paelopatides55870GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
Paelopatides55871-
Paelopatides55872POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2
Paelopatides55873-
Paelopatides55874-
Paelopatides55875GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45
Paelopatides55876FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides55877RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Paelopatides55878-
Paelopatides55879ENDONUCLEASE-RELATED
Paelopatides55880-
Paelopatides55881-
Paelopatides55882-
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