About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55883-
Paelopatides55884U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B
Paelopatides55885POL PROTEIN
Paelopatides5588660S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N
Paelopatides5588726S PROTEASOME REGULATORY SUBUNIT
Paelopatides55888NUCLEAR FACTOR-RELATED
Paelopatides55889-
Paelopatides55890-
Paelopatides55891ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
Paelopatides55892CARBOHYDRATE SULFOTRANSFERASE
Paelopatides55893REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55894DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
Paelopatides55895-
Paelopatides55896RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20
Paelopatides55897CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides55898-
Paelopatides55899ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides55900-
Paelopatides55901-
Paelopatides55902TRANSPOSABLE ELEMENT-RELATED
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