About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56052-
Paelopatides56053STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN
Paelopatides56054ACETYL-COA C-ACETYLTRANSFERASE
Paelopatides56055FERREDOXIN/ADRENODOXIN
Paelopatides56056OS08G0560600 PROTEIN
Paelopatides56057-
Paelopatides56058PROTEIN CBG26694
Paelopatides56059L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides56060-
Paelopatides56061-
Paelopatides56062FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides56063ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides56064RETROTRANSPOSON
Paelopatides56065RETROTRANSPOSON
Paelopatides56066PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides56067HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides56069-
Paelopatides56070CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides56071POL PROTEIN
Paelopatides56072TRANSPOSASE, PUTATIVE-RELATED
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