About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56381INTEGRIN ALPHA
Paelopatides56382INTEGRIN ALPHA
Paelopatides56383HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides563846-PHOSPHOGLUCONATE DEHYDROGENASE
Paelopatides56385TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides56386PROTEIN CBG26694
Paelopatides56387PROTEIN CBG26694
Paelopatides56388PROTEIN CBG26694
Paelopatides56389-
Paelopatides56390SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
Paelopatides56391-
Paelopatides56392SI:CH211-196P9.1-RELATED
Paelopatides56393-
Paelopatides56394-
Paelopatides56395-
Paelopatides56396-
Paelopatides56397-
Paelopatides56399RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides56400-
Paelopatides56401-
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