About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56467PROTEIN CBG26694
Paelopatides56468CARBOHYDRATE SULFOTRANSFERASE
Paelopatides56469PROTEIN CBG26694
Paelopatides56470ENZYMATIC POLYPROTEIN-RELATED
Paelopatides56471STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN
Paelopatides56472-
Paelopatides56473SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
Paelopatides56474SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
Paelopatides56475HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER
Paelopatides56476UNCHARACTERIZED
Paelopatides56477PROTEIN CBG26694
Paelopatides56478PROTEIN CBG26694
Paelopatides56479FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides56480-
Paelopatides56481FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides56482PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides56483PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides56484RETROTRANSPOSON
Paelopatides56489ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
Paelopatides56490INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS
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