About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56534ELECTRON TRANSPORT OXIDOREDUCTASE
Paelopatides56536NF-KAPPA B ACTIVATING PROTEIN
Paelopatides56537PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides56538DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides56540GTP-BINDING
Paelopatides56541-
Paelopatides56542METAL DEPENDENT HYDROLASE - RELATED
Paelopatides56543ENDONUCLEASE-RELATED
Paelopatides56544METAL DEPENDENT HYDROLASE - RELATED
Paelopatides56545METAL DEPENDENT HYDROLASE - RELATED
Paelopatides56546GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY
Paelopatides56547-
Paelopatides56548-
Paelopatides56549PROTEIN CBG26694
Paelopatides56550-
Paelopatides56551OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides56552FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides56553-
Paelopatides56554ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
Paelopatides56555-
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